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microarray data medicago truncatula gene expression atlas  (Medicago)

 
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    Medicago microarray data medicago truncatula gene expression atlas
    Criteria used for gene expression filtering of M. <t> truncatula </t> genes identified in Task4
    Microarray Data Medicago Truncatula Gene Expression Atlas, supplied by Medicago, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+data+medicago+truncatula+gene+expression+atlas/microarray+data+medicago+truncatula+gene+expression+atlas/pmc04274732-357-7-6
    Average 90 stars, based on 1 article reviews
    microarray data medicago truncatula gene expression atlas - by Bioz Stars, 2026-09
    90/100 stars

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    1) Product Images from "A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants"

    Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

    Journal: BMC Plant Biology

    doi: 10.1186/s12870-014-0333-0

    Criteria used for gene expression filtering of M. truncatula genes identified in Task4
    Figure Legend Snippet: Criteria used for gene expression filtering of M. truncatula genes identified in Task4

    Techniques Used: Gene Expression, Control

    Venn diagram of M. truncatula genes up-regulated under various AM-related conditions. Genes listed in Additional file : Table S2 (Task4) were subjected to combinatorial analysis according to the criteria listed in Table . Red domain, genes induced in mycorrhizal roots; green domain, genes induced by Myc-LCO after 6 h; dark blue domain, genes induced in laser-microdissected cortex cells with arbuscules; light blue domain, genes induced in the dmi3 mutant (compare with Table ). Criterion 5 (MF-24 h) did not yield any result. Genes identified according to Criterion 6 are marked in red. List A, B, and C are separately shown in Additional file : Table S3.
    Figure Legend Snippet: Venn diagram of M. truncatula genes up-regulated under various AM-related conditions. Genes listed in Additional file : Table S2 (Task4) were subjected to combinatorial analysis according to the criteria listed in Table . Red domain, genes induced in mycorrhizal roots; green domain, genes induced by Myc-LCO after 6 h; dark blue domain, genes induced in laser-microdissected cortex cells with arbuscules; light blue domain, genes induced in the dmi3 mutant (compare with Table ). Criterion 5 (MF-24 h) did not yield any result. Genes identified according to Criterion 6 are marked in red. List A, B, and C are separately shown in Additional file : Table S3.

    Techniques Used: Mutagenesis

    Phylogenetic analysis of an α-glucosidase with high conservation ratio. The first hit in the list of predicted AM-related proteins was an α-glucosidase (AES81209, Additional file : Table S4). The S. lycopersicum sequence was used to retrieve the closest homologues in a wide range of species (Additional file : File S1) for phylogenetic analysis. (a) Tree as in Figure with the first hit per species identified at NCBI by blastp against non-redundant protein database using the tomato α-glucosidase (Solyc03g094020.2.1) as a query. (b) Tree with all homologues of Solyc03g094020.2.1 from tomato ( S. lycopersicum ), grape vine ( V. vinifera ), poplar ( P. trichocarpa ), M. truncatula , and A. thaliana . Note the AM-related branch (Gluc_1) that has no homologue from A. thaliana . The closest Arabidopsis homologue (At_Gluc_1) clusters far away.
    Figure Legend Snippet: Phylogenetic analysis of an α-glucosidase with high conservation ratio. The first hit in the list of predicted AM-related proteins was an α-glucosidase (AES81209, Additional file : Table S4). The S. lycopersicum sequence was used to retrieve the closest homologues in a wide range of species (Additional file : File S1) for phylogenetic analysis. (a) Tree as in Figure with the first hit per species identified at NCBI by blastp against non-redundant protein database using the tomato α-glucosidase (Solyc03g094020.2.1) as a query. (b) Tree with all homologues of Solyc03g094020.2.1 from tomato ( S. lycopersicum ), grape vine ( V. vinifera ), poplar ( P. trichocarpa ), M. truncatula , and A. thaliana . Note the AM-related branch (Gluc_1) that has no homologue from A. thaliana . The closest Arabidopsis homologue (At_Gluc_1) clusters far away.

    Techniques Used: Sequencing

    Related Articles

    Microarray:

    Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants
    Article Snippet: .. Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ). ..

    Gene Expression:

    Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants
    Article Snippet: .. Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ). ..



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    microarray data medicago truncatula gene expression atlas  (Medicago)
    90
    Medicago microarray data medicago truncatula gene expression atlas
    Criteria used for gene expression filtering of M. <t> truncatula </t> genes identified in Task4
    Microarray Data Medicago Truncatula Gene Expression Atlas, supplied by Medicago, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/microarray+data+medicago+truncatula+gene+expression+atlas/microarray+data+medicago+truncatula+gene+expression+atlas/pmc04274732-357-7-6
    Average 90 stars, based on 1 article reviews
    microarray data medicago truncatula gene expression atlas - by Bioz Stars, 2026-09
    90/100 stars
    		  Buy from Supplier

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    Criteria used for gene expression filtering of M. truncatula genes identified in Task4

    Journal: BMC Plant Biology

    Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

    doi: 10.1186/s12870-014-0333-0

    Figure Lengend Snippet: Criteria used for gene expression filtering of M. truncatula genes identified in Task4

    Article Snippet: Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ).

    Techniques: Gene Expression, Control

    Venn diagram of M. truncatula genes up-regulated under various AM-related conditions. Genes listed in Additional file : Table S2 (Task4) were subjected to combinatorial analysis according to the criteria listed in Table . Red domain, genes induced in mycorrhizal roots; green domain, genes induced by Myc-LCO after 6 h; dark blue domain, genes induced in laser-microdissected cortex cells with arbuscules; light blue domain, genes induced in the dmi3 mutant (compare with Table ). Criterion 5 (MF-24 h) did not yield any result. Genes identified according to Criterion 6 are marked in red. List A, B, and C are separately shown in Additional file : Table S3.

    Journal: BMC Plant Biology

    Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

    doi: 10.1186/s12870-014-0333-0

    Figure Lengend Snippet: Venn diagram of M. truncatula genes up-regulated under various AM-related conditions. Genes listed in Additional file : Table S2 (Task4) were subjected to combinatorial analysis according to the criteria listed in Table . Red domain, genes induced in mycorrhizal roots; green domain, genes induced by Myc-LCO after 6 h; dark blue domain, genes induced in laser-microdissected cortex cells with arbuscules; light blue domain, genes induced in the dmi3 mutant (compare with Table ). Criterion 5 (MF-24 h) did not yield any result. Genes identified according to Criterion 6 are marked in red. List A, B, and C are separately shown in Additional file : Table S3.

    Article Snippet: Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ).

    Techniques: Mutagenesis

    Phylogenetic analysis of an α-glucosidase with high conservation ratio. The first hit in the list of predicted AM-related proteins was an α-glucosidase (AES81209, Additional file : Table S4). The S. lycopersicum sequence was used to retrieve the closest homologues in a wide range of species (Additional file : File S1) for phylogenetic analysis. (a) Tree as in Figure with the first hit per species identified at NCBI by blastp against non-redundant protein database using the tomato α-glucosidase (Solyc03g094020.2.1) as a query. (b) Tree with all homologues of Solyc03g094020.2.1 from tomato ( S. lycopersicum ), grape vine ( V. vinifera ), poplar ( P. trichocarpa ), M. truncatula , and A. thaliana . Note the AM-related branch (Gluc_1) that has no homologue from A. thaliana . The closest Arabidopsis homologue (At_Gluc_1) clusters far away.

    Journal: BMC Plant Biology

    Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

    doi: 10.1186/s12870-014-0333-0

    Figure Lengend Snippet: Phylogenetic analysis of an α-glucosidase with high conservation ratio. The first hit in the list of predicted AM-related proteins was an α-glucosidase (AES81209, Additional file : Table S4). The S. lycopersicum sequence was used to retrieve the closest homologues in a wide range of species (Additional file : File S1) for phylogenetic analysis. (a) Tree as in Figure with the first hit per species identified at NCBI by blastp against non-redundant protein database using the tomato α-glucosidase (Solyc03g094020.2.1) as a query. (b) Tree with all homologues of Solyc03g094020.2.1 from tomato ( S. lycopersicum ), grape vine ( V. vinifera ), poplar ( P. trichocarpa ), M. truncatula , and A. thaliana . Note the AM-related branch (Gluc_1) that has no homologue from A. thaliana . The closest Arabidopsis homologue (At_Gluc_1) clusters far away.

    Article Snippet: Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ).

    Techniques: Sequencing